Deep Learning
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ScCotag: Prior-Informed Co-Optimal Transport for Robust Single-Cell Multi-Omics Integration
Li, Yang; Tan, Yuting; Chen, Rui; Zhou, Xin Maizie; Chen, You; Huo, Yuankai; Guo, Xingyi; Tiwari, Anshul; Wen, Zhexing; Zhong, Xue; Malin, Bradley A.; Li, Bingshan; Yin, Zhijun. (2026).聽ScCotag: Prior-informed co-optimal transport for robust single-cell multi-omics integration.聽Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and… Read MoreOctober 28, 2026
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Assessing and improving deep domain alignment in ultrasound via simulation diversity
Pan, Ying-Chun; Khan, Christopher M.; Berger, Matthew; Bryant, John M.; Lefevre, Ryan J.; Eagle, Susan S.; Byram, Brett C. (2026).聽Assessing and improving deep domain alignment in ultrasound via simulation diversity.聽Ultrasonics, 167, 108193.聽https://doi.org/10.1016/j.ultras.2026.108193 Deep learning has shown promise for improving聽ultrasound beamforming聽(the process of combining ultrasound… Read MoreJuly 28, 2026
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HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization
Tang, Yucheng.; He, Yufan.; Nath, Vishwesh.; Guo, Pengfeig.; Deng, Ruining.; Yao, Tianyuan.; Liu, Quan.; Cui, Can.; Yang, Yuechen.; Yin, Mengmeng.; Xu, Ziyue.; Roth, Holger.; Xu, Daguang.; Yang, Haichun.; Huo, Yuankai. (2026).聽HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization.聽IS and T International Symposium on Electronic Imaging… Read MoreMay 26, 2026
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MedPTQ: a practical pipeline for real post-training quantization in 3D medical image segmentation
Chongyu Qu; Ritchie Zhao; Ye Yu; Bin Liu; Tianyuan Yao; Junchao Zhu; Bennett A. Landman; Yucheng Tang; Yuankai Huo (2026).聽MedPTQ: A practical pipeline for real post-training quantization in 3D medical image segmentation.聽Journal of Medical Imaging, 13(1), 014006.聽https://doi.org/10.1117/1.JMI.13.1.014006 This study focuses on making advanced deep… Read MoreMarch 26, 2026
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UNISELF: A unified network with instance normalization and self-ensembled lesion fusion for multiple sclerosis lesion segmentation
Zhang, Jinwei; Zuo, Lianrui; Dewey, Blake E.; Remedios, Samuel W.; Liu, Yihao; Hays, Savannah P.; Pham, Dzung L.; Mowry, Ellen M.; Newsome, Scott Douglas; Calabresi, Peter Arthur; Saidha, Shiv; Carass, Aaron; & Prince, Jerry L. (2026).聽UNISELF: A unified network with instance normalization and self-ensembled lesion fusion for… Read MoreFebruary 25, 2026
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Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Krishnan, Aravind R., Li, Thomas Z., Remedios, Lucas W., Kim, Michael E., Gao, Chenyu., Rudravaram, Gaurav., McMaster, Elyssa M., Saunders, Adam M., Bao, Shunxing., Xu, Kaiwen., Zuo, Lianrui., Sandler, Kim Lori., Maldonado, Fabien., Huo, Yuankai., & Landman, Bennett Allan. (2025 海角情).聽Multipath cycleGAN for harmonization of paired and unpaired… Read MoreNovember 23, 2025 海角情
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DeepAndes: A Self-Supervised Vision Foundation Model for Multispectral Remote Sensing Imagery of the Andes
Guo, Junlin., Zimmer-Dauphinee, James R., Nieusma, Jordan M., Lu, Siqi., Liu, Quan., Deng, Ruining., Cui, Can., Yue, Jialin., Lin, Yizhe., Yao, Tianyuan., Xiong, Juming., Zhu, Junchao., Qu, Chongyu., Yang, Yuechen., Wilkes, Mitchell., Wang, Xiao., VanValkenburgh, Parker., Wernke, Steven A., & Huo, Yuankai. (2025 海角情).聽DeepAndes: A Self-Supervised Vision Foundation… Read MoreNovember 23, 2025 海角情
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DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics
Bayrak, Roza G.; Hansen, Colin B.; Salas, Jorge Alberto; Ahmed, Nafis; Lyu, Ilwoo; Mather, Mara M.; Huo, Yuankai; Chang, Catie E. (2025 海角情). DeepPhysioRecon: Tracing peripheral physiology in low frequency fMRI dynamics. Imaging Neuroscience, 3, IMAG.a.163. https://doi.org/10.1162/IMAG.a.163 Many brain studies that use functional magnetic resonance… Read MoreOctober 23, 2025 海角情
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ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction
Xiong, Juming, Deng, Ruining, Yue, Jialin, Lu, Siqi, Guo, Junlin, Lionts, Marilyn, Yao, Tianyuan, Cui, Can, Zhu, Junchao, & Qu, Chongyu. (2025 海角情). ZeroReg3D: A zero-shot registration pipeline for 3D consecutive histopathology image reconstruction. Journal of Medical Imaging, 12(4), 44002. https://doi.org/10.1117/1.JMI.12.4.044002 Histological analysis, which examines… Read MoreSeptember 26, 2025 海角情
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Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning
Lu, Zhengyi, Liang, Hao, Lu, Ming, Wang, Xiao, Yan, Xinqiang, & Huo, Yuankai. (2025 海角情). 鈥淔ast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning.鈥� Meta-Radiology, 3(3), 100166. https://doi.org/10.1016/j.metrad.2025 海角情.100166 Ultrahigh field (UHF) Magnetic Resonance Imaging (MRI) provides much stronger signals than standard MRI, allowing for… Read MoreAugust 20, 2025 海角情